A B C D E F G H I L M N O P Q R S T V W X Y

A

addAttribute(Object, Object, Object) - Method in class org.caida.otter.AttributeSet

Add an attribute to inside a category

addAttribute(Object, Object, Object) - Method in class org.caida.otter.DisplayObjects

Add an attribute to inside a category

addAttribute(Object, Object, Object) - Method in class org.caida.otter.Line

Add an attribute to inside a category

addAttribute(Object, Object, Object) - Method in class org.caida.otter.Node

Add an attribute to inside a category

addCategory(Object) - Method in class org.caida.otter.AttributeSet

Add a category to the set.

addCategory(Object) - Method in class org.caida.otter.DisplayObjects

Add a category to the set.

addCategory(Object) - Method in class org.caida.otter.Line

Add a category to the set.

addCategory(Object) - Method in class org.caida.otter.Node

Add a category to the set.

addChild(String, GraphNode) - Method in class org.caida.otter.GraphNode

Add one child to a node

addChild(String, GraphNode[]) - Method in class org.caida.otter.GraphNode

Add several children to a node

addChild(String, Vector) - Method in class org.caida.otter.GraphNode

Add several children to a node

addColumnNameToNodeName() - Method in class org.caida.otter.DisplayObjects

addCoordinate(Coordinate) - Method in class org.caida.otter.Column

Add a coordinate.

addCoordinate(Coordinate) - Method in class org.caida.otter.Row

Add a coordinate to the row

addDisplayObjects(DisplayObjects) - Method in class org.caida.otter.ColumnSet

Add data to the column object and its encapsulted DisplayObjects object by specifying a DisplayObjects object.

addLabel(int, int, int, String, String) - Method in class org.caida.otter.DisplayObjects

Add a label to our DisplayObject

addLabel(Label) - Method in class org.caida.otter.Column

Add a label to the column.

addLabel(Label) - Method in class org.caida.otter.ColumnSet

Add a label to the encapsulated DisplayObjects object, and include the label in it's appropriate column.

addLabel(Label) - Method in class org.caida.otter.DisplayObjects

addLibSeaAttributes(Graph, DisplayObjects) - Method in class org.caida.otter.LibSeaToPlotPaths

One stop shopping for all the attributes that need to be added in order to create an otter file.

addLine(Coordinate, Coordinate, String) - Method in class org.caida.otter.DisplayObjects

Add a line to our DisplayObject

addLine(Line) - Method in class org.caida.otter.ColumnSet

Add a line to the encapsulated DisplayObjects object, but no column specific stuff is done.

addLine(Line) - Method in class org.caida.otter.DisplayObjects

addNeighborNode(Node) - Method in class org.caida.otter.Node

Add a node neighbor by its index (either parent or child)

addNode(int, int, int, String, String) - Method in class org.caida.otter.DisplayObjects

Add a node to our DisplayObject

addNode(int, int, int, String, String, int) - Method in class org.caida.otter.DisplayObjects

Add a node to the DisplayObject John Tusson Tue Aug 14 16:28:12 PDT 2001

addNode(Node) - Method in class org.caida.otter.Column

Add a node to the column.

addNode(Node) - Method in class org.caida.otter.ColumnSet

Add a node to the encapsulated DisplayObjects object, and include the node in it's appropriate column and row.

addNode(Node) - Method in class org.caida.otter.DisplayObjects

addPath(GraphNode, String) - Method in class org.caida.otter.DirectedGraph

Add a path to the graph.

addPath(Vector, float, boolean) - Method in class org.caida.otter.PathSet

Add a path to the path list (no calculcations yet)

addWhiteSpace(StringBuffer, int) - Method in class org.caida.otter.TextTools

Allows the ability to add white space to a string buffer so one can specify the columns and have them be unified accross stdout.

attribSet - Variable in class org.caida.otter.Line

AttributeSet - class org.caida.otter.AttributeSet.

This is a hash of hashes.

AttributeSet() - Constructor for class org.caida.otter.AttributeSet

Create an empty attribute set.

B

BOUNDING_BOX_DENSITY - Static variable in class org.caida.otter.Column

BOUNDING_BOX_MARGIN - Static variable in class org.caida.otter.Column

BoundingBox - class org.caida.otter.BoundingBox.

A class representing a bounding box with explicit coordinates.

BoundingBox(int, int, int, int) - Constructor for class org.caida.otter.BoundingBox

Create a bounding box with these boundaries

C

calcMaxDepth() - Method in class org.caida.otter.GraphNode

Calculate depth in graph for each node using the current node as the only source.

calcMaxDepth() - Method in class org.caida.otter.PathSet

Calculate the max depth over the entire graph.

calcMaxDepth(Vector, String) - Method in class org.caida.otter.DirectedGraph

Read in a Vector of GraphNodes that will serve as sourcee for the calcMaxDepth algorithm

calcMaxDepth(Vector, String) - Method in class org.caida.otter.GraphNode

CalcMaxDepth of the graph from multiple nodes under a single source category.

calculateRowColBoundingBoxes(int) - Method in class org.caida.otter.Column

Calculate the bounding boxes containing all the coordinates in the column and save the results in the boundingBoxes Vector.

calculateXYBoundingBoxes() - Method in class org.caida.otter.Column

Calculate the bounding boxes containing all the coordinates in the column and save the results in the boundingBoxes Vector.

changeAttribute(Object, Object, Object) - Method in class org.caida.otter.AttributeSet

Replace an attribute inside a category

changeAttribute(Object, Object, Object) - Method in class org.caida.otter.DisplayObjects

Replace an attribute inside a category

changeAttribute(Object, Object, Object) - Method in class org.caida.otter.Line

Replace an attribute inside a category

changeAttribute(Object, Object, Object) - Method in class org.caida.otter.Node

Replace an attribute inside a category

checkSelfConsistencyForNodesAndLines() - Method in class org.caida.otter.DisplayObjects

check the data structure for self-consistency

colName - Variable in class org.caida.otter.Coordinate

colNum - Variable in class org.caida.otter.Coordinate

Column - class org.caida.otter.Column.

A column object.

Column() - Constructor for class org.caida.otter.Column

Create an empty column.

Column(int) - Constructor for class org.caida.otter.Column

Create a column with an x value.

Column(Label) - Constructor for class org.caida.otter.Column

Create a new column and insert a label as the first member

Column(Node) - Constructor for class org.caida.otter.Column

Create a new column and insert a node as the first member.

Column(String) - Constructor for class org.caida.otter.Column

Create a column with a name.

ColumnSet - class org.caida.otter.ColumnSet.

Encapsulates a DisplayObjects object, it keeps track of elements in terms of columns as well.

ColumnSet(int, int) - Constructor for class org.caida.otter.ColumnSet

Create an empty ColumnSet.

ColumnSet(int, int, DisplayObjects) - Constructor for class org.caida.otter.ColumnSet

Initialize a new ColumnSet object with a pre-made DisplayObjects object.

compare(Object, Object) - Method in class org.caida.otter.CompareCoordsByColNum

compare(Object, Object) - Method in class org.caida.otter.CompareCoordsByX

compare(Object, Object) - Method in class org.caida.otter.CompareCoordsByY

CompareCoordsByColNum - class org.caida.otter.CompareCoordsByColNum.

CompareCoordsByColNum() - Constructor for class org.caida.otter.CompareCoordsByColNum

CompareCoordsByX - class org.caida.otter.CompareCoordsByX.

CompareCoordsByX() - Constructor for class org.caida.otter.CompareCoordsByX

CompareCoordsByY - class org.caida.otter.CompareCoordsByY.

CompareCoordsByY() - Constructor for class org.caida.otter.CompareCoordsByY

containsCoord(Coordinate) - Method in class org.caida.otter.Row

Test a row if it contains the specified coordinate.

containsCoord(String) - Method in class org.caida.otter.Row

Test a row if it contains the specified coordinate.

containsKey(String) - Method in class org.caida.otter.DisplayObjects

containsLabel(Label) - Method in class org.caida.otter.DisplayObjects

containsLabel(String) - Method in class org.caida.otter.DisplayObjects

containsLine(Line) - Method in class org.caida.otter.DisplayObjects

containsNode(Node) - Method in class org.caida.otter.DisplayObjects

containsNode(String) - Method in class org.caida.otter.DisplayObjects

coord1 - Variable in class org.caida.otter.Line

coord2 - Variable in class org.caida.otter.Line

Coordinate - class org.caida.otter.Coordinate.

Base class for a lot of display type thingys

Coordinate(int) - Constructor for class org.caida.otter.Coordinate

Create a new coordinate

Coordinate(int, int, int) - Constructor for class org.caida.otter.Coordinate

Create a new coordinate

Coordinate(int, int, int, String) - Constructor for class org.caida.otter.Coordinate

Create a new coordinate

Coordinate(int, int, int, String, String) - Constructor for class org.caida.otter.Coordinate

Create a new coordinate

Coordinate(int, int, int, String, String, int) - Constructor for class org.caida.otter.Coordinate

Keep track of the orignal node number from the LibSea Graph file.

countOutboundLinks() - Method in class org.caida.otter.Column

Count the number of outbound links from the column.

countPathsContainingNode(String) - Method in class org.caida.otter.PathSet

Count all the times that a node is referenced in any path and return that count

countTotalPathsContainingLink(String, String) - Method in class org.caida.otter.PathSet

count all the times that a node is referenced in any path and return that count.

countUniquePathsContainingLink(String, String) - Method in class org.caida.otter.PathSet

Count all the times that a node is referenced in any path and return that count.

D

debug() - Method in class org.caida.otter.BoundingBox

debug() - Method in class org.caida.otter.Column

debug() - Method in class org.caida.otter.ColumnSet

debug() - Method in class org.caida.otter.Coordinate

debug() - Method in class org.caida.otter.Row

debugColContents() - Method in class org.caida.otter.Column

Purge the column contents to the screen

debugColSize() - Method in class org.caida.otter.ColumnSet

decrementWeight(String, float) - Method in class org.caida.otter.GraphNode

Decrement a node's weight for a given source

deleteAttribute(Object, Object) - Method in class org.caida.otter.AttributeSet

Remove an attribute from inside a category

deleteAttribute(Object, Object) - Method in class org.caida.otter.DisplayObjects

Remove an attribute from inside a category

deleteAttribute(Object, Object) - Method in class org.caida.otter.Line

Remove an attribute from inside a category

deleteAttribute(Object, Object) - Method in class org.caida.otter.Node

Remove an attribute from inside a category

deleteCategory(Object) - Method in class org.caida.otter.AttributeSet

Remove a category from the set of categories.

deleteCategory(Object) - Method in class org.caida.otter.DisplayObjects

Remove an attribute from the set of categories.

deleteCategory(Object) - Method in class org.caida.otter.Line

Remove an attribute from the set of categories.

deleteCategory(Object) - Method in class org.caida.otter.Node

Remove an attribute from the set of categories.

DirectedGraph - class org.caida.otter.DirectedGraph.

Represent a directed graph, support simple queries on the graph The name field of the graph node should/will be unique because the nodes are kept track of with a hashtable keying on name.

DirectedGraph() - Constructor for class org.caida.otter.DirectedGraph

Construct an empty graph

disperseNotFoundColumn(Vector) - Method in class org.caida.otter.ColumnSet

Disperse an entire column into the rest of the graph.

DisplayObjects - class org.caida.otter.DisplayObjects.

A container for nodes, labels, and links.

DisplayObjects() - Constructor for class org.caida.otter.DisplayObjects

Create an empty display object

doesLineCrossBoundingBox(int, int, int, int) - Method in class org.caida.otter.BoundingBox

Test the provided line segment for intersection with this bounding box.

doesLineCrossBoundingBox(int, int, int, int) - Method in class org.caida.otter.Column

Test a line against the bounding boxes of the column.

doesLineCrossBoundingBox(Node, Node) - Method in class org.caida.otter.Column

Overloaded version of doesLineCrossBoundingBox to accept Nodes

doesLineIntersect(LineSegment) - Method in class org.caida.otter.LineSegment

Test of the current line segment intersects with the argument.

E

enumerateAttributes(Object) - Method in class org.caida.otter.AttributeSet

Get a list of attributes in a given category

enumerateAttributes(Object) - Method in class org.caida.otter.DisplayObjects

Get a list of attributes in a given category

enumerateAttributes(Object) - Method in class org.caida.otter.Line

Get a list of attributes in a given category

enumerateAttributes(Object) - Method in class org.caida.otter.Node

Get a list of attributes in a given category

enumerateCategories() - Method in class org.caida.otter.AttributeSet

Get a list of objects that represent all of the categories contained in this node's category set.

enumerateCategories() - Method in class org.caida.otter.DisplayObjects

Get a list of objects that represent all of the categories contained in this node's category set.

enumerateCategories() - Method in class org.caida.otter.Line

Get a list of objects that represent all of the categories contained in this node's category set.

enumerateCategories() - Method in class org.caida.otter.Node

Get a list of objects that represent all of the categories contained in this node's category set.

equals(Object) - Method in class org.caida.otter.CompareCoordsByColNum

equals(Object) - Method in class org.caida.otter.CompareCoordsByX

equals(Object) - Method in class org.caida.otter.CompareCoordsByY

equals(Object) - Method in class org.caida.otter.Coordinate

override default equals to do name equivalance if both args are Coordinates.

equals(Object) - Method in class org.caida.otter.GraphNode

Override equals to test name equivalence

F

finalizeColumn() - Method in class org.caida.otter.Column

Make sure the column contents contain the right X val.

findDistanceBetweenColumns(Column, Column) - Method in class org.caida.otter.ColumnSet

helper method to find distance between columns.

G

get_COLUMN_ATTRIBUTE() - Method in class org.caida.otter.GetOpts

Accessor function for the private data member COLUMN_ATTRIBUTE.

get_COLUMN_WIDTH() - Method in class org.caida.otter.GetOpts

Accessor function for the private data member COLUMN_WIDTH.

get_DISPLAY_LABELS() - Method in class org.caida.otter.GetOpts

Accessor function for the private data member DISPLAY_LABELS.

get_IGNORE_INCOMPLETE_PATHS() - Method in class org.caida.otter.GetOpts

Accessor function for the private data member IGNORE_INCOMPLETE_PATHS.

get_INFO_FLAG() - Method in class org.caida.otter.GetOpts

Accessor function for the private data member INFO_FLAG.

get_INPUT_FILE() - Method in class org.caida.otter.GetOpts

Accessor function for the private data member INPUT_FILE.

get_LABEL_SPACING() - Method in class org.caida.otter.GetOpts

Accessor function for the private data member LABEL_SPACING.

get_LABEL_TIERS() - Method in class org.caida.otter.GetOpts

Accessor function for the private data member LABEL_TIERS.

get_LIBSEA_OUTFILE() - Method in class org.caida.otter.GetOpts

Accessor function for the private data member LIBSEA_OUTFILE.

get_LIST_ATTRIBUTES() - Method in class org.caida.otter.GetOpts

Accessor function for the private data member LIST_ATTRIBUTES.

get_LIST_SOURCES() - Method in class org.caida.otter.GetOpts

Accessor function for the private data member LIST_SOURCES.

get_MAX_CHILD_SEARCH_DEPTH() - Method in class org.caida.otter.GetOpts

Accessor function for the private data member MAX_CHILD_SEARCH_DEPTH.

get_MIN_PERCENT_USAGE() - Method in class org.caida.otter.GetOpts

Accessor function for the private data member MIN_PERCENT_USAGE.

get_NODE_DATA_FILE() - Method in class org.caida.otter.GetOpts

Accessor function for the private data member NODE_DATA_FILE.

get_NODE_SPACING() - Method in class org.caida.otter.GetOpts

Accessor function for the private data member NODE_SPACING.

get_PATH_WEIGHT_BIN_COUNT() - Method in class org.caida.otter.GetOpts

Accessor function for the private data member PATH_WEIGHT_BIN_COUNT.

get_REMOVE_COL_NAMES() - Method in class org.caida.otter.GetOpts

Accessor function for the private data member REMOVE_COL_NAMES.

get_REMOVE_COLS_SPECIFIED() - Method in class org.caida.otter.GetOpts

Accessor function for the private data member REMOVE_COLS_SPECIFIED.

get_ROW_SPACING() - Method in class org.caida.otter.GetOpts

Accessor function for the private data member ROW_SPACING.

get_SCREEN_X() - Method in class org.caida.otter.GetOpts

Accessor function for the private data member SCREEN_X.

get_SCREEN_Y() - Method in class org.caida.otter.GetOpts

Accessor function for the private data member SCREEN_Y.

get_SOURCES() - Method in class org.caida.otter.GetOpts

Accessor function for the private data member SOURCE.

get_Status() - Method in class org.caida.otter.GetOpts

Accessor function for the private data member Status.

get_UNKNOWN_NODE_NAME() - Method in class org.caida.otter.GetOpts

Accessor function for the private data member UNKNOWN_NODE_NAME.

get_USE_ALL_FORWARD_PATHS() - Method in class org.caida.otter.GetOpts

Accessor function for the private data member USE_ALL_FORWARD_PATHS.

getAllBottom() - Method in class org.caida.otter.PathSet

Get all nodes that are at the bottom of the graph as indicated by that path's orientation.

getAllDestinations() - Method in class org.caida.otter.PathSet

Originally meant for backwards compatibility, its convenient to figure out the names of all the paths that were oriented in a certain direction.

getAllNodes() - Method in class org.caida.otter.DirectedGraph

Return array of all nodes

getAllNodes() - Method in class org.caida.otter.PathSet

Return an array that is a complete list of all nodes in the graph without duplicates.

getAllSources() - Method in class org.caida.otter.DirectedGraph

Return all the sources that have been stored in the graph

getAllSources() - Method in class org.caida.otter.GraphNode

Get all sources that this node is used in

getAllSources() - Method in class org.caida.otter.PathSet

Originally meant for backwards compatibility, its convenient to figure out the names of all the paths that were oriented in a certain direction.

getAllTop() - Method in class org.caida.otter.PathSet

Get all nodes that are at the top of the graph as indicated by that path's orientation.

getASName(String) - Method in class org.caida.otter.PathSet

retrieve AS Name data

getASNumber() - Method in class org.caida.otter.GraphNode

Get a node's AS Number

getASNumber(String) - Method in class org.caida.otter.PathSet

retrieve AS data

getAttribute(Object, Object) - Method in class org.caida.otter.AttributeSet

Get an attribute from inside a category

getAttribute(Object, Object) - Method in class org.caida.otter.DisplayObjects

Get an attribute from inside a category

getAttribute(Object, Object) - Method in class org.caida.otter.Line

Get an attribute from inside a category

getAttribute(Object, Object) - Method in class org.caida.otter.Node

Get an attribute from inside a category

getAttributeName(String) - Method in class org.caida.otter.PathSet

retrieve Attribute Name data

getBottom() - Method in class org.caida.otter.BoundingBox

Get the bottom boundary

getChildren(String) - Method in class org.caida.otter.GraphNode

Get a node's children for a given source if they exist

getChildren(String) - Method in class org.caida.otter.PathSet

return the children of a node from across all paths

getChildren(String, String) - Method in class org.caida.otter.DirectedGraph

Retrieve all the neighbors of a node

getChildren(String, String) - Method in class org.caida.otter.PathSet

return the children of a node from a specific source

getCity() - Method in class org.caida.otter.GraphNode

Get a node's city

getCity(String) - Method in class org.caida.otter.PathSet

retrieve city data

getColNum() - Method in class org.caida.otter.Coordinate

Get the column number

getColumnName() - Method in class org.caida.otter.Coordinate

get column name

getCoord1() - Method in class org.caida.otter.Line

getCoord2() - Method in class org.caida.otter.Line

getCoordCount() - Method in class org.caida.otter.Row

Get a count of all the coordinate in the row.

getCoords() - Method in class org.caida.otter.Column

Return an array of the coords in the column

getCoordVect() - Method in class org.caida.otter.Column

Return the coordinate vector.

getCoordVect() - Method in class org.caida.otter.Row

Get a vector of all the coordinates contained by the row.

getDepth(String) - Method in class org.caida.otter.GraphNode

Get a node's depth in the graph

getDepth(String) - Method in class org.caida.otter.PathSet

Find the depth of a node in the graph

getDestLinkWeight(String, String, String) - Method in class org.caida.otter.PathSet

look up all paths the link is in, sum path weights (according to destination)

getDisplayObjects() - Method in class org.caida.otter.ColumnSet

Return the encapsulated DisplayObjects object.

getGraphSize() - Method in class org.caida.otter.DirectedGraph

Return the count of nodes in the graph

getLabel(String) - Method in class org.caida.otter.DisplayObjects

getLabelCount() - Method in class org.caida.otter.Column

Return the number of labels in the column.

getLabelCount() - Method in class org.caida.otter.DisplayObjects

getLabelCount() - Method in class org.caida.otter.Row

Get a count of the number of labels in the row.

getLabelEnumeration() - Method in class org.caida.otter.DisplayObjects

getLabelVect() - Method in class org.caida.otter.Column

Return the label vector.

getLat() - Method in class org.caida.otter.GraphNode

Get a node's latitude

getLat(String) - Method in class org.caida.otter.PathSet

retrieve lat data

getLeft() - Method in class org.caida.otter.BoundingBox

Get the left boundary

getLine(String) - Method in class org.caida.otter.DisplayObjects

getLineCount() - Method in class org.caida.otter.DisplayObjects

getLineEnumeration() - Method in class org.caida.otter.DisplayObjects

getLinkDestinations(String, String) - Method in class org.caida.otter.PathSet

look up node in list, return non-redundant list of sources that it appears in.

getLinkSources(String, String) - Method in class org.caida.otter.PathSet

getLong() - Method in class org.caida.otter.GraphNode

Get a node's longitude

getLong(String) - Method in class org.caida.otter.PathSet

retrieve long data

getMaxDepth() - Method in class org.caida.otter.PathSet

Return the max depth of the graph.

getMaxDepth(String) - Method in class org.caida.otter.DirectedGraph

Return the depth from source to destination if calcMaxDepth() has already been called, -1 otherwise

getMessage() - Method in class org.caida.otter.NeedMoreWhiteSpace

Used to retrieve the message string

getName() - Method in class org.caida.otter.Column

Get a column's name

getName() - Method in class org.caida.otter.Coordinate

Get the coordinate name

getName() - Method in class org.caida.otter.GraphNode

Get a node's name

getName() - Method in class org.caida.otter.Line

getNeighborNodes() - Method in class org.caida.otter.Node

Get neighbor node list.

getNode(String) - Method in class org.caida.otter.DirectedGraph

Get a GraphNode by its name

getNode(String) - Method in class org.caida.otter.DisplayObjects

getNodeCount() - Method in class org.caida.otter.Column

Return the number of nodes in the column.

getNodeCount() - Method in class org.caida.otter.DisplayObjects

getNodeCount() - Method in class org.caida.otter.Row

Get a count of the number of nodes in the row.

getNodeEnumeration() - Method in class org.caida.otter.DisplayObjects

getNodeInfo(PathSet, String) - Method in class org.caida.otter.IOtext

Add lat and long data (and city name and anything else) to set of graph data points.

getNodeNeighbors(String) - Method in class org.caida.otter.PathSet

Get the neighbors of a node (their string names that is)

getNodes() - Method in class org.caida.otter.Column

Return the node array.

getNodeSources(String) - Method in class org.caida.otter.PathSet

look up node in list, return non-redundant list of sources that it appears in.

getNodeVect() - Method in class org.caida.otter.Column

Return the node vector.

getNodeVect() - Method in class org.caida.otter.Row

Get a vector of the nodes in the row.

getNodeWeight(String, String) - Method in class org.caida.otter.PathSet

look up all paths the node is in, sum path weights

GetOpts - class org.caida.otter.GetOpts.

GetOpts class parses the command line arguments to PlotPaths.

GetOpts(String[]) - Constructor for class org.caida.otter.GetOpts

Constructor for GetOpts.

getOrientation(String) - Method in class org.caida.otter.DirectedGraph

Query of a given source is oriented foward or backward in the graph

getPairLinkWeight(String, String, String, String) - Method in class org.caida.otter.PathSet

look up all paths the link is in, sum path weights (according to source)

getParent(String) - Method in class org.caida.otter.GraphNode

Get a node parent for a given source if one exists

getRight() - Method in class org.caida.otter.BoundingBox

Get the right boundary

getRowNum() - Method in class org.caida.otter.Coordinate

Get the row number

getSourceAndDestLinkWeight(String, String, String) - Method in class org.caida.otter.PathSet

Get inbound and outbound in a single measurement

getSourceLinkWeight(String, String, String) - Method in class org.caida.otter.PathSet

look up all paths the link is in, sum path weights (according to source)

getTop() - Method in class org.caida.otter.BoundingBox

Get the top boundary

getWeight(String) - Method in class org.caida.otter.GraphNode

Get a node's weight given a source

getX1() - Method in class org.caida.otter.LineSegment

return x1

getX2() - Method in class org.caida.otter.LineSegment

return x2

getXLoc() - Method in class org.caida.otter.Column

Get the x coordinate of the column.

getY1() - Method in class org.caida.otter.LineSegment

return y1

getY2() - Method in class org.caida.otter.LineSegment

return y2

getYLoc() - Method in class org.caida.otter.Row

Get a row's y location.

GraphInfo - class org.caida.otter.GraphInfo.

Class to gain information from LibSea graph file.

GraphInfo() - Constructor for class org.caida.otter.GraphInfo

GraphIO - class org.caida.otter.GraphIO.

This class will read in a graph file as defined in the LibSea graph library.

GraphIO() - Constructor for class org.caida.otter.GraphIO

GraphNode - class org.caida.otter.GraphNode.

A node in a directed graph.

GraphNode(String) - Constructor for class org.caida.otter.GraphNode

Make a new node w/ no children

GraphNode(String, float, float) - Constructor for class org.caida.otter.GraphNode

Make a new node w/ no children, w/ Lat Long

GraphNode(String, String, float) - Constructor for class org.caida.otter.GraphNode

Make a new node w/ one child and weight

GraphNode(String, String, GraphNode) - Constructor for class org.caida.otter.GraphNode

Make a new node w/ one child

GraphNode(String, String, GraphNode[]) - Constructor for class org.caida.otter.GraphNode

Make a new node w/ several children

GraphNode(String, String, GraphNode[], float) - Constructor for class org.caida.otter.GraphNode

Make a new node w/ several children and weight

GraphNode(String, String, GraphNode[], float, float) - Constructor for class org.caida.otter.GraphNode

Make a new node w/ several children, w/ Lat Long

GraphNode(String, String, GraphNode[], float, float, float) - Constructor for class org.caida.otter.GraphNode

Make a new node w/ several children, w/ Lat Long and weight

GraphNode(String, String, GraphNode, float) - Constructor for class org.caida.otter.GraphNode

Make a new node w/ one child and weight

GraphNode(String, String, GraphNode, float, float) - Constructor for class org.caida.otter.GraphNode

Make a new node w/ one child, w/ Lat Long

GraphNode(String, String, GraphNode, float, float, float) - Constructor for class org.caida.otter.GraphNode

Make a new node w/ one child, w/ Lat Long and weight

GraphNode(String, String, Vector) - Constructor for class org.caida.otter.GraphNode

Make a new node w/ several children

GraphNode(String, String, Vector, float) - Constructor for class org.caida.otter.GraphNode

Make a new node w/ several children and weight

GraphNode(String, String, Vector, float, float) - Constructor for class org.caida.otter.GraphNode

Make a new node w/ several children, w/ Lat Long

GraphNode(String, String, Vector, float, float, float) - Constructor for class org.caida.otter.GraphNode

Make a new node w/ several children, w/ Lat Long and weight

H

hasNeighborNodes() - Method in class org.caida.otter.Node

See if the node has any neighbors at all.

I

incrementWeight(String, float) - Method in class org.caida.otter.GraphNode

Add to a node's weight for a given source

index - Variable in class org.caida.otter.Coordinate

insertHiddenNodes() - Method in class org.caida.otter.ColumnSet

Insert hidden nodes into all columns that have overlapping vertical links on nodes.

insertHiddenNodes(int, DisplayObjects) - Method in class org.caida.otter.Column

Insert hidden nodes within the column for links that are purely vertical.

invertImage(boolean, boolean) - Method in class org.caida.otter.DisplayObjects

Invert our display object along either axis.

IOotter - class org.caida.otter.IOotter.

IOotter - a class that handles IO in Otter format

IOotter() - Constructor for class org.caida.otter.IOotter

IOtext - class org.caida.otter.IOtext.

IOtext - handle IO relating to text format data.

IOtext() - Constructor for class org.caida.otter.IOtext

isChildOf(String, GraphNode) - Method in class org.caida.otter.GraphNode

Recursively check the parents to see if any of them correspond to the node given

isEmpty() - Method in class org.caida.otter.Column

Check if the column contains any coordinates.

isEmpty() - Method in class org.caida.otter.Row

Test if the row is empty

isHidden() - Method in class org.caida.otter.Node

Test isHidden flag

isRoot() - Method in class org.caida.otter.Node

Test isRoot flag.

isSetColRow - Variable in class org.caida.otter.Coordinate

isSetXY - Variable in class org.caida.otter.Coordinate

L

Label - class org.caida.otter.Label.

Label(int, int, int, String, String) - Constructor for class org.caida.otter.Label

Create a new label.

LibSeaToPlotPaths - class org.caida.otter.LibSeaToPlotPaths.

Class that bridges the LibSea graph format to the data structures that exist in PlotPaths.

LibSeaToPlotPaths() - Constructor for class org.caida.otter.LibSeaToPlotPaths

Line - class org.caida.otter.Line.

Line(Coordinate, Coordinate, String) - Constructor for class org.caida.otter.Line

LineSegment - class org.caida.otter.LineSegment.

LineSegment(float, float, float, float) - Constructor for class org.caida.otter.LineSegment

Create a line segment from these coordinates

LineSegment(int, int, int, int) - Constructor for class org.caida.otter.LineSegment

Create a line segment from these coordinates

loadGraph(String) - Method in class org.caida.otter.GraphIO

loadPaths(Graph, GetOpts) - Method in class org.caida.otter.LibSeaToPlotPaths

Extracts the path infomation from the LibSea graph file and adds the proper information into the PathSet data structures that originally were written for PlotPaths.

M

main(String[]) - Static method in class org.caida.otter.PlotPaths

mergeChildren(String, GraphNode) - Method in class org.caida.otter.GraphNode

Merge the children for a given source.

N

name - Variable in class org.caida.otter.Coordinate

name - Variable in class org.caida.otter.Line

NeedMoreWhiteSpace - exception org.caida.otter.NeedMoreWhiteSpace.

Exception class to catch if more white space is needed.

NeedMoreWhiteSpace(String) - Constructor for class org.caida.otter.NeedMoreWhiteSpace

Constructor for the Exception to allow customized message

Node - class org.caida.otter.Node.

Nodes may be connected by lines.

Node(int) - Constructor for class org.caida.otter.Node

Make a new node

Node(int, int, int, String, String) - Constructor for class org.caida.otter.Node

Make a new node.

Node(int, int, int, String, String, int) - Constructor for class org.caida.otter.Node

Make a new node.

nodeNumber - Variable in class org.caida.otter.Coordinate

normalizeSize(int, int) - Method in class org.caida.otter.DisplayObjects

Normalize the size of the final image.

O

orderColumnsByBoundingBoxes() - Method in class org.caida.otter.ColumnSet

Order columns trying to minimize the number of overlapping links.

P

PathSet - class org.caida.otter.PathSet.

Store a collection of Paths and their associated statistics

PlotPaths - class org.caida.otter.PlotPaths.

PlotPaths() - Constructor for class org.caida.otter.PlotPaths

PlotPathsIO - interface org.caida.otter.PlotPathsIO.

Standard interface for IO operations

PlotPathsUtil - class org.caida.otter.PlotPathsUtil.

PlotPathsUtil() - Constructor for class org.caida.otter.PlotPathsUtil

printAttributeInfo(Graph) - Method in class org.caida.otter.GraphInfo

Retrieves Attribute Information about the Graph file and prints it out to the screen in a columated format.

printAvailableSources(Graph) - Method in class org.caida.otter.GraphInfo

Q

quicksort(Object[], Comparator) - Static method in class org.caida.otter.PlotPathsUtil

Generic quicksort that sorts a list of things

quicksort(Object[], Comparator, int, int) - Static method in class org.caida.otter.PlotPathsUtil

quicksortByForeignKey(int[], int[]) - Static method in class org.caida.otter.PlotPathsUtil

Generic quicksort that sorts a list of objects by a foreign key.

quicksortByForeignKey(int[], int[], int, int) - Static method in class org.caida.otter.PlotPathsUtil

quicksortByForeignKey(Object[], int[]) - Static method in class org.caida.otter.PlotPathsUtil

Generic quicksort that sorts a list of objects by a foreign key.

quicksortByForeignKey(Object[], int[], int, int) - Static method in class org.caida.otter.PlotPathsUtil

quicksortByForeignKey(Object[], Object[], Comparator) - Static method in class org.caida.otter.PlotPathsUtil

Generic quicksort that sorts a list of objects by a foreign key.

R

readInput(String, String) - Method in class org.caida.otter.IOotter

placeholder b/c we don't load otter format data.

readInput(String, String) - Method in class org.caida.otter.IOtext

Build a graph given an input filename

readInput(String, String) - Method in interface org.caida.otter.PlotPathsIO

removeCoord(Coordinate) - Method in class org.caida.otter.Column

Remove a coordinate from this column

removeCoord(Coordinate) - Method in class org.caida.otter.Row

Remove the specified coordinate

removeCoord(String) - Method in class org.caida.otter.Row

Remove the specified coordinate

removeDuplicatesFromVect(Vector) - Static method in class org.caida.otter.PlotPathsUtil

Check a vector to see if it contains duplucates, and remove them if it does.

removeLabel(Label) - Method in class org.caida.otter.DisplayObjects

Remove a label from the DisplayObject

Row - class org.caida.otter.Row.

Row() - Constructor for class org.caida.otter.Row

Create an empty row

Row(Coordinate) - Constructor for class org.caida.otter.Row

Create a row and initialize it with this coordinate

Row(int) - Constructor for class org.caida.otter.Row

Create an empty row with this y val

rowNum - Variable in class org.caida.otter.Coordinate

S

setASName(String, String) - Method in class org.caida.otter.PathSet

Store AS name associated with a node

setASNumber(int) - Method in class org.caida.otter.GraphNode

Set a node's AS number

setASNumber(String, int) - Method in class org.caida.otter.PathSet

Store AS Number associated with a node

setAttributeName(String, String) - Method in class org.caida.otter.PathSet

Store Attribute name that will be used to sort columns

setCity(String) - Method in class org.caida.otter.GraphNode

Set a node's city

setCity(String, String) - Method in class org.caida.otter.PathSet

Store City associated with a node

setColIdx(int) - Method in class org.caida.otter.Column

Set a column's index number.

setColIdx(int) - Method in class org.caida.otter.Row

Set a all the nodes to the specified column index

setColumnAttribute(Graph, PathSet, String) - Method in class org.caida.otter.LibSeaToPlotPaths

Sets the column attribute that will be used to reference the columns.

setColumnName(String) - Method in class org.caida.otter.Coordinate

set column name

setColumnNum(int) - Method in class org.caida.otter.Coordinate

set column number

setColumnX(int) - Method in class org.caida.otter.Column

Set the X val of everything in column

setDepth(String, int) - Method in class org.caida.otter.GraphNode

Set a node's depth in the graph

setIsHidden(boolean) - Method in class org.caida.otter.Node

Set isHidden flag.

setIsRoot(boolean) - Method in class org.caida.otter.Node

Flip root flag on node.

setLat(float) - Method in class org.caida.otter.GraphNode

Set a node's latitude

setLat(String, float) - Method in class org.caida.otter.PathSet

Store Latitude associated with a node

setLong(float) - Method in class org.caida.otter.GraphNode

Set a nodes longitude

setLong(String, float) - Method in class org.caida.otter.PathSet

Store Longitude associated with a node

setName(String) - Method in class org.caida.otter.Column

Set a column's name.

setName(String) - Method in class org.caida.otter.Coordinate

Set the node name

setParent(String, GraphNode) - Method in class org.caida.otter.GraphNode

Add one parent to a node

setRow(int) - Method in class org.caida.otter.Row

Set the y value of a row.

setRowNum(int) - Method in class org.caida.otter.Coordinate

set the row number

setRowX(int) - Method in class org.caida.otter.Row

Necessary because rows are subserviant to Columns.

setXandYvalues() - Method in class org.caida.otter.ColumnSet

Set our respective coordinates X and Y values with default values for the row and column, starting a 0.

setXandYvalues(int) - Method in class org.caida.otter.ColumnSet

Set our respective coordinates X and Y values with default values for the row and column, starting at the specified offset.

setXandYvalues(int, int) - Method in class org.caida.otter.Column

Explicitly synchronize the x and y values of nodes w/ the row and column they belong to.

setXandYvalues(int, int) - Method in class org.caida.otter.Row

Explicitly sync all the x's and y's of the coordinates in the row

setXandYvalues(int, int, int) - Method in class org.caida.otter.Column

Explicitly synchronize the x and y values of nodes w/ the row and column they belong to.

setXandYvalues(int, int, int) - Method in class org.caida.otter.ColumnSet

Set our respective coordinates X and Y values based on their row and column.

shiftColumnX(int) - Method in class org.caida.otter.Column

Shift all the values in a column by the offset.

shiftRow(int) - Method in class org.caida.otter.Row

Shift a row's y value by a constant.

shiftRowX(int) - Method in class org.caida.otter.Row

Necessary because rows are subserviant to Columns.

sortNodesByParentMean(int, int) - Method in class org.caida.otter.Column

Request all rows to sort their nodes by parent mean.

sortNodesByParentMean(int, int) - Method in class org.caida.otter.Row

Sort a vector of coordinate by their parent (and child) mean.

sourceHashGet(String) - Method in class org.caida.otter.DirectedGraph

sourceHashPut(String, Object) - Method in class org.caida.otter.DirectedGraph

sourceHashSize() - Method in class org.caida.otter.DirectedGraph

spaceColumnsByNodeCount(int) - Method in class org.caida.otter.ColumnSet

Space columns by node count with default column width

spaceColumnsByNodeCount(int, int) - Method in class org.caida.otter.ColumnSet

Update X coords of nodes such that each column receives space on account of how many nodes are contained on one level.

spaceColumnsEvenly() - Method in class org.caida.otter.ColumnSet

Space each column in the DisplayObjects evenly using the default column spacing.

spaceColumnsEvenly(int) - Method in class org.caida.otter.ColumnSet

Space each column in the DisplayObjects evenly.

spaceColumnsEvenly(int, int) - Method in class org.caida.otter.ColumnSet

Space each column in the DisplayObjects evenly.

spaceNodesByParentMean(int, int) - Method in class org.caida.otter.ColumnSet

Space out overlapping nodes by looking at their parent and sorting nodes by the mean of the parent.

staggerLabels(int, int) - Method in class org.caida.otter.DisplayObjects

Assumes all the labels are already at the same X val; stagger labels into a specified number of tiers over the given total space.

T

TextTools - class org.caida.otter.TextTools.

Added features to manipulate text and strings.

TextTools() - Constructor for class org.caida.otter.TextTools

toString() - Method in class org.caida.otter.LineSegment

Override default toString to print Coordinates of line segment to the screen

V

validateChildren(String, DirectedGraph) - Method in class org.caida.otter.GraphNode

Make sure all the children are valid children for the graph meaning that the children are contained in the graph.

W

writeGraph(String, Graph, boolean) - Method in class org.caida.otter.GraphIO

writeOutput(DisplayObjects, String, GetOpts) - Method in class org.caida.otter.IOotter

Output data in Otter format .

writeOutput(DisplayObjects, String, GetOpts) - Method in class org.caida.otter.IOtext

placeholder b/c we don't write out plain text output.

writeOutput(DisplayObjects, String, GetOpts) - Method in interface org.caida.otter.PlotPathsIO

X

x - Variable in class org.caida.otter.Coordinate

Y

y - Variable in class org.caida.otter.Coordinate

A B C D E F G H I L M N O P Q R S T V W X Y